nD labelsΒΆ

Display a labels layer above of an image layer using the add_labels and add_image APIs

Tags: visualization-nD

nD labels
from skimage import data
from scipy import ndimage as ndi
import napari

blobs = data.binary_blobs(length=128, volume_fraction=0.1, n_dim=3)
viewer = napari.view_image(blobs[::2].astype(float), name='blobs', scale=(2, 1, 1))
labeled = ndi.label(blobs)[0]
viewer.add_labels(labeled[::2], name='blob ID', scale=(2, 1, 1))

if __name__ == '__main__':

Gallery generated by Sphinx-Gallery