napari
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  • napari tutorials
    • Annotation
      • Annotating videos with napari
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      • Using Dask and napari to process & view large datasets
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      • Annotating segmentation with text and bounding boxes
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      • Single cell tracking with napari
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  • How-to guides
    • Using layers
      • Using the image layer
      • Using the labels layer
      • Using the points layer
      • Using the shapes layer
      • Using the surface layer
      • Using the tracks layer
      • Using the vectors layer
    • Hooking up your own events
    • napari + ImageJ how-to guide
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    • Running napari headlessly
  • In-depth explanations
    • Using magicgui in napari
    • An introduction to the event loop in napari
    • Napari models and events
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  • Glossary
  • Gallery
    • Tags
      • analysis (4)
        • Add labels with features
        • Annotate 2D
        • Paint nD
        • Annotate segmentation with text
      • experimental (10)
        • Interaction box points
        • Interactive move rectangle
        • Action manager
        • New theme
        • Scale bar
        • Linked layers
        • Interaction box image
        • Viewer FPS label
        • Surface normals wireframe
        • Spherical points
      • gui (13)
        • Multiple viewers
        • Get current viewer
        • 3D image plane rendering
        • Action manager
        • Custom key bindings
        • bbox annotator
        • Custom mouse functions
        • magicgui viewer
        • Set theme
        • magicgui Image Arithmetic
        • magicgui parameter sweep
        • Mouse drag callback
        • Multiple viewer widget
      • historical (4)
        • napari without gui_qt
        • Update console
        • Reader plugin
        • Shapes to labels
      • interactivity (3)
        • Interactive scripting
        • Cursor position
        • Cursor ray
      • layers (5)
        • Add labels with features
        • 3D image plane rendering
        • 3D Paths
        • Add 3D image
        • Add labels
      • visualization-advanced (13)
        • Affine transforms
        • nD multiscale image non-uniform
        • 3D image plane rendering
        • Add multiscale image
        • To screenshot
        • 3D Paths
        • Tracks 3D with graph
        • Show points based on feature
        • nD multiscale image
        • Points over time
        • Add vectors color by angle
        • Tracks 3D
        • Dynamic projections dask
      • visualization-basic (20)
        • Add vectors image
        • Add shapes with text
        • Add points with multicolor text
        • Add points with features
        • Add points
        • Add image transformed
        • Labels 2D
        • Set colormaps
        • Add shapes
        • Pass colormaps
        • Add points with text
        • Layers
        • Add grayscale image
        • Tracks 2D
        • Add vectors
        • Add surface 2D
        • Image depth
        • Add image
        • Add shapes with features
        • Add labels
      • visualization-nD (14)
        • nD vectors image
        • nD labels
        • nD shapes with text
        • nD shapes
        • Dask nD image
        • Mixed dimensions labels
        • nD vectors
        • nD image
        • Swap dims
        • Add 3D image
        • nD surface
        • nD points with features
        • Add points on nD shapes
        • nD points
    • Add image
    • Get current viewer
    • Add image transformed
    • Set theme
    • Interaction box image
    • Add 3D image
    • Add surface 2D
    • Add grayscale image
    • Scale bar
    • Annotate 2D
    • nD image
    • nD labels
    • nD surface
    • Viewer FPS label
    • Multiple viewers
    • Image depth
    • magicgui viewer
    • Pass colormaps
    • Add multiscale image
    • Mixed dimensions labels
    • Spherical points
    • Surface normals wireframe
    • Cursor position
    • nD vectors image
    • Paint nD
    • nD multiscale image
    • Dask nD image
    • Layers
    • nD shapes with text
    • Interactive scripting
    • nD multiscale image non-uniform
    • Linked layers
    • nD points
    • Labels 2D
    • Swap dims
    • 3D Paths
    • Minimum blending
    • Add vectors
    • Add labels
    • Add vectors image
    • Set colormaps
    • Reader plugin
    • New theme
    • Show points based on feature
    • Custom key bindings
    • napari without gui_qt
    • Add points
    • Points over time
    • Add points with text
    • nD vectors
    • Add shapes with text
    • Add vectors color by angle
    • Mouse drag callback
    • Add points with multicolor text
    • nD points with features
    • Tracks 3D with graph
    • 3D image plane rendering
    • Tracks 2D
    • Add labels with features
    • Update console
    • nD shapes
    • Dynamic projections dask
    • magicgui parameter sweep
    • magicgui Image Arithmetic
    • Affine transforms
    • Cursor ray
    • Interactive move rectangle
    • Add points on nD shapes
    • Add shapes with features
    • Add points with features
    • Tracks 3D
    • Method to get napari style in magicgui based windows
    • Add shapes
    • Shapes to labels
    • Interaction box points
    • Custom mouse functions
    • To screenshot
    • Annotate segmentation with text
    • Action manager
    • bbox annotator
    • Multiple viewer widget

Gallery¶

Examples of napari usage.

  • Tags
Add image

Add image

Add image
Get current viewer

Get current viewer

Get current viewer
Add image transformed

Add image transformed

Add image transformed
Set theme

Set theme

Set theme
Interaction box image

Interaction box image

Interaction box image
Add 3D image

Add 3D image

Add 3D image
Add surface 2D

Add surface 2D

Add surface 2D
Add grayscale image

Add grayscale image

Add grayscale image
Scale bar

Scale bar

Scale bar
Annotate 2D

Annotate 2D

Annotate 2D
nD image

nD image

nD image
nD labels

nD labels

nD labels
nD surface

nD surface

nD surface
Viewer FPS label

Viewer FPS label

Viewer FPS label
Multiple viewers

Multiple viewers

Multiple viewers
Image depth

Image depth

Image depth
magicgui viewer

magicgui viewer

magicgui viewer
Pass colormaps

Pass colormaps

Pass colormaps
Add multiscale image

Add multiscale image

Add multiscale image
Mixed dimensions labels

Mixed dimensions labels

Mixed dimensions labels
Spherical points

Spherical points

Spherical points
Surface normals wireframe

Surface normals wireframe

Surface normals wireframe
Cursor position

Cursor position

Cursor position
nD vectors image

nD vectors image

nD vectors image
Paint nD

Paint nD

Paint nD
nD multiscale image

nD multiscale image

nD multiscale image
Dask nD image

Dask nD image

Dask nD image
Layers

Layers

Layers
nD shapes with text

nD shapes with text

nD shapes with text
Interactive scripting

Interactive scripting

Interactive scripting
nD multiscale image non-uniform

nD multiscale image non-uniform

nD multiscale image non-uniform
Linked layers

Linked layers

Linked layers
nD points

nD points

nD points
Labels 2D

Labels 2D

Labels 2D
Swap dims

Swap dims

Swap dims
3D Paths

3D Paths

3D Paths
Minimum blending

Minimum blending

Minimum blending
Add vectors

Add vectors

Add vectors
Add labels

Add labels

Add labels
Add vectors image

Add vectors image

Add vectors image
Set colormaps

Set colormaps

Set colormaps
Reader plugin

Reader plugin

Reader plugin
New theme

New theme

New theme
Show points based on feature

Show points based on feature

Show points based on feature
Custom key bindings

Custom key bindings

Custom key bindings
napari without gui_qt

napari without gui_qt

napari without gui_qt
Add points

Add points

Add points
Points over time

Points over time

Points over time
Add points with text

Add points with text

Add points with text
nD vectors

nD vectors

nD vectors
Add shapes with text

Add shapes with text

Add shapes with text
Add vectors color by angle

Add vectors color by angle

Add vectors color by angle
Mouse drag callback

Mouse drag callback

Mouse drag callback
Add points with multicolor text

Add points with multicolor text

Add points with multicolor text
nD points with features

nD points with features

nD points with features
Tracks 3D with graph

Tracks 3D with graph

Tracks 3D with graph
3D image plane rendering

3D image plane rendering

3D image plane rendering
Tracks 2D

Tracks 2D

Tracks 2D
Add labels with features

Add labels with features

Add labels with features
Update console

Update console

Update console
nD shapes

nD shapes

nD shapes
Dynamic projections dask

Dynamic projections dask

Dynamic projections dask
magicgui parameter sweep

magicgui parameter sweep

magicgui parameter sweep
magicgui Image Arithmetic

magicgui Image Arithmetic

magicgui Image Arithmetic
Affine transforms

Affine transforms

Affine transforms
Cursor ray

Cursor ray

Cursor ray
Interactive move rectangle

Interactive move rectangle

Interactive move rectangle
Add points on nD shapes

Add points on nD shapes

Add points on nD shapes
Add shapes with features

Add shapes with features

Add shapes with features
Add points with features

Add points with features

Add points with features
Tracks 3D

Tracks 3D

Tracks 3D
Method to get napari style in magicgui based windows

Method to get napari style in magicgui based windows

Method to get napari style in magicgui based windows
Add shapes

Add shapes

Add shapes
Shapes to labels

Shapes to labels

Shapes to labels
Interaction box points

Interaction box points

Interaction box points
Custom mouse functions

Custom mouse functions

Custom mouse functions
To screenshot

To screenshot

To screenshot
Annotate segmentation with text

Annotate segmentation with text

Annotate segmentation with text
Action manager

Action manager

Action manager
bbox annotator

bbox annotator

bbox annotator
Multiple viewer widget

Multiple viewer widget

Multiple viewer widget

Gallery generated by Sphinx-Gallery

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