Build your own workshop

Build your own workshop#

Note

This section is about building your own workshop - it should probably be removed from your workshop material once you have adapted it to your needs.

Build locally#

To build this workshop locally and preview the generated materials in html format (as a webpage), follow the steps below.

1. Install all required packages#

First, fork this repository and clone it to your local system by

git clone git@github.com:<your-username>/napari-workshop-template.git

In a console/terminal, after installing python on your system using the distribution of your choice, and ideally using a virtual environment, navigate to the napari-workshop-template folder, run

python -m pip install -r requirements.txt

2. Update the configuration files for the website#

You will want to update napari-workshops/_toc.yml and napari-workshops/_config.yml to suit the needs of your workshop. These two files will determine how the website is rendered.

In _toc.yml you can put the Markdown files you want to be rendered in the order you want them.

Important

You don’t use the .md extension, just the name of the file.

Use the existing file as a template and adjust it to suit your needs. For example, we recommend removing this section on building the workshop from your final workshop materials. For more information, see the official Jupyter Book Table of Contents documentation.

In _config.yml you can customize the build of the website. Be sure and take a look at, at a minimum:

  • title and author information at the top: adjust the title as needed and add your name to the authors!

  • the repository section towards the bottom: replace the URL of the template repository with your repository—this will be what the GitHub logo links to in your website—and ensure the path_to_book matches what you are using—you don’t need to change this if you didn’t change the layout of the repository.

If you’re curious about the other settings already in the file or the range of available options, see the official official Jupyter Book documentation.

3. Building your book locally#

To render the html version of your book, including autogenerating figures or running Jupyter notebooks, run

jupyter book build napari-workshops

where napari-workshops is the name of the folder where your book is stored. The rendered version of the workshop materials will be under napari-workshops/_build/html. For more information, see the JupyterBook documentation.

Note: The html files built by the jupyter book commands do not need to be stored on GitHub, so we added the following path to our .gitignore file:

napari-workshops/_build/

Publish and share your workshop#

Publish your workshop materials as a static web page#

If you want to set up this material to be published as a website from your fork, using GitHub pages, follow the steps below.

Important

For this to work, you need to have GitHub pages enabled on your GitHub account. To do this, follow the deployment guide.

  1. Edit the .github/workflows/pages.yml file in your workshop folder to include any installation or setup requirements. By default, the following commands are run as a setup and build step:

    - name: Build workshop
  run: |
    python -m pip install -r requirements.txt
    jupyter book build napari-workshops

  2. Edit the .github/workflows/pages.yml file in your workshop folder to set up the desired folder there the (html) built artifacts are stored. By default, the artifacts are in the following path:

    - name: Upload artifact
  uses: actions/upload-pages-artifact@v1
  with:
    path: 'napari-workshops/_build/html'

As currently configured, whenever a new commit is added to the main branch of the repository, a new deployment is made: the Jupyter book is built and the generated pages are uploaded to GitHub pages.

After GitHub pages is set up for your repository, you will find the workshop materials at

https://<your-username>.github.io/<workshop-name>

For this template, the built site is at

https://napari.github.io/napari-workshop-template

Index your workshop using Zenodo (for citation purposes)#

If you want people to be able to cite your workshop materials, you can create a DOI for it using Zenodo.

Select Creative Commons Attribution 4.0 International (CC-BY 4.0) license if you want attribution.

Enable a citation file for your repository#

Check the GitHub documentation for more details on how to use the citation.cff file to enable others to cite your repository.

Upstream your ideas!#

If you spot something that can be improved in this template, or if you want to suggest adding a notebook to the base materials, feel free to reach out! You can:

Contents