Animate mixed

Display a labels layer above of an image layer using the add_labels and add_image APIs

Rendering frames...

  0%|          | 0/331 [00:00<?, ?it/s]IMAGEIO FFMPEG_WRITER WARNING: input image is not divisible by macro_block_size=16, resizing from (1089, 661) to (1104, 672) to ensure video compatibility with most codecs and players. To prevent resizing, make your input image divisible by the macro_block_size or set the macro_block_size to 1 (risking incompatibility).

  0%|          | 1/331 [00:00<01:15,  4.39it/s]
  2%|▏         | 5/331 [00:00<00:19, 16.70it/s]
  3%|▎         | 9/331 [00:00<00:13, 23.56it/s]
  4%|▍         | 13/331 [00:00<00:11, 28.03it/s]
  5%|▌         | 17/331 [00:00<00:10, 31.10it/s]
  6%|▋         | 21/331 [00:00<00:09, 32.30it/s]
  8%|▊         | 25/331 [00:00<00:09, 33.20it/s]
  9%|▉         | 29/331 [00:01<00:08, 33.57it/s]
 10%|▉         | 33/331 [00:01<00:09, 30.48it/s]
 11%|█         | 37/331 [00:01<00:11, 26.20it/s]
 12%|█▏        | 40/331 [00:01<00:11, 24.33it/s]
 13%|█▎        | 43/331 [00:01<00:12, 22.32it/s]
 14%|█▍        | 46/331 [00:01<00:13, 21.38it/s]
 15%|█▍        | 49/331 [00:02<00:13, 20.88it/s]
 16%|█▌        | 52/331 [00:02<00:13, 20.94it/s]
 17%|█▋        | 55/331 [00:02<00:13, 20.47it/s]
 18%|█▊        | 58/331 [00:02<00:13, 20.23it/s]
 18%|█▊        | 61/331 [00:02<00:13, 20.07it/s]
 19%|█▉        | 64/331 [00:02<00:13, 20.00it/s]
 20%|██        | 67/331 [00:02<00:13, 19.58it/s]
 21%|██        | 69/331 [00:03<00:13, 19.38it/s]
 22%|██▏       | 72/331 [00:03<00:13, 19.78it/s]
 22%|██▏       | 74/331 [00:03<00:13, 19.68it/s]
 23%|██▎       | 76/331 [00:03<00:13, 19.29it/s]
 24%|██▎       | 78/331 [00:03<00:13, 19.28it/s]
 24%|██▍       | 80/331 [00:03<00:12, 19.42it/s]
 25%|██▍       | 82/331 [00:03<00:12, 19.40it/s]
 25%|██▌       | 84/331 [00:03<00:12, 19.38it/s]
 26%|██▌       | 86/331 [00:03<00:12, 19.38it/s]
 27%|██▋       | 88/331 [00:04<00:12, 19.12it/s]
 27%|██▋       | 90/331 [00:04<00:12, 19.27it/s]
 28%|██▊       | 93/331 [00:04<00:11, 21.13it/s]
 29%|██▉       | 96/331 [00:04<00:10, 22.30it/s]
 30%|██▉       | 99/331 [00:04<00:10, 23.09it/s]
 31%|███       | 102/331 [00:04<00:09, 23.58it/s]
 32%|███▏      | 105/331 [00:04<00:09, 23.90it/s]
 33%|███▎      | 108/331 [00:04<00:09, 24.19it/s]
 34%|███▎      | 111/331 [00:04<00:09, 24.01it/s]
 34%|███▍      | 114/331 [00:05<00:09, 24.08it/s]
 35%|███▌      | 117/331 [00:05<00:08, 24.36it/s]
 36%|███▋      | 120/331 [00:05<00:08, 24.54it/s]
 37%|███▋      | 123/331 [00:05<00:08, 23.95it/s]
 38%|███▊      | 126/331 [00:05<00:08, 23.74it/s]
 39%|███▉      | 129/331 [00:05<00:08, 23.83it/s]
 40%|███▉      | 132/331 [00:05<00:08, 24.12it/s]
 41%|████      | 135/331 [00:05<00:08, 23.90it/s]
 42%|████▏     | 138/331 [00:06<00:08, 23.82it/s]
 43%|████▎     | 141/331 [00:06<00:07, 23.88it/s]
 44%|████▎     | 144/331 [00:06<00:07, 24.04it/s]
 44%|████▍     | 147/331 [00:06<00:07, 24.13it/s]
 45%|████▌     | 150/331 [00:06<00:07, 24.22it/s]
 46%|████▌     | 153/331 [00:06<00:07, 25.04it/s]
 47%|████▋     | 157/331 [00:06<00:06, 26.70it/s]
 49%|████▊     | 161/331 [00:06<00:06, 27.84it/s]
 50%|████▉     | 165/331 [00:07<00:05, 28.83it/s]
 51%|█████     | 168/331 [00:07<00:09, 16.74it/s]
 52%|█████▏    | 171/331 [00:07<00:12, 12.54it/s]
 52%|█████▏    | 173/331 [00:08<00:13, 11.35it/s]
 53%|█████▎    | 175/331 [00:08<00:14, 10.67it/s]
 53%|█████▎    | 177/331 [00:08<00:14, 10.40it/s]
 54%|█████▍    | 179/331 [00:08<00:14, 10.37it/s]
 55%|█████▍    | 181/331 [00:08<00:14, 10.59it/s]
 55%|█████▌    | 183/331 [00:09<00:13, 10.83it/s]
 56%|█████▌    | 185/331 [00:09<00:12, 11.26it/s]
 56%|█████▋    | 187/331 [00:09<00:12, 11.74it/s]
 57%|█████▋    | 189/331 [00:09<00:11, 12.21it/s]
 58%|█████▊    | 191/331 [00:09<00:11, 12.55it/s]
 58%|█████▊    | 193/331 [00:09<00:10, 12.94it/s]
 59%|█████▉    | 195/331 [00:09<00:10, 13.33it/s]
 60%|█████▉    | 197/331 [00:10<00:09, 13.94it/s]
 60%|██████    | 199/331 [00:10<00:09, 14.24it/s]
 61%|██████    | 201/331 [00:10<00:09, 14.43it/s]
 61%|██████▏   | 203/331 [00:10<00:08, 14.50it/s]
 62%|██████▏   | 205/331 [00:10<00:08, 14.57it/s]
 63%|██████▎   | 207/331 [00:10<00:08, 14.57it/s]
 63%|██████▎   | 209/331 [00:10<00:08, 14.23it/s]
 64%|██████▎   | 211/331 [00:11<00:08, 14.38it/s]
 64%|██████▍   | 213/331 [00:11<00:08, 14.35it/s]
 65%|██████▍   | 215/331 [00:11<00:08, 13.97it/s]
 66%|██████▌   | 217/331 [00:11<00:08, 13.75it/s]
 66%|██████▌   | 219/331 [00:11<00:08, 13.30it/s]
 67%|██████▋   | 221/331 [00:11<00:08, 13.29it/s]
 67%|██████▋   | 223/331 [00:11<00:08, 13.19it/s]
 68%|██████▊   | 225/331 [00:12<00:08, 13.05it/s]
 69%|██████▊   | 227/331 [00:12<00:07, 13.09it/s]
 69%|██████▉   | 229/331 [00:12<00:07, 13.32it/s]
 70%|██████▉   | 231/331 [00:12<00:07, 13.53it/s]
 70%|███████   | 233/331 [00:12<00:07, 13.52it/s]
 71%|███████   | 235/331 [00:12<00:07, 13.59it/s]
 72%|███████▏  | 237/331 [00:13<00:06, 13.65it/s]
 72%|███████▏  | 239/331 [00:13<00:06, 13.73it/s]
 73%|███████▎  | 241/331 [00:13<00:06, 13.75it/s]
 73%|███████▎  | 243/331 [00:13<00:06, 13.82it/s]
 74%|███████▍  | 245/331 [00:13<00:06, 13.77it/s]
 75%|███████▍  | 247/331 [00:13<00:06, 13.57it/s]
 75%|███████▌  | 249/331 [00:13<00:06, 13.48it/s]
 76%|███████▌  | 251/331 [00:14<00:05, 13.58it/s]
 76%|███████▋  | 253/331 [00:14<00:05, 13.51it/s]
 77%|███████▋  | 255/331 [00:14<00:05, 13.53it/s]
 78%|███████▊  | 257/331 [00:14<00:05, 13.45it/s]
 78%|███████▊  | 259/331 [00:14<00:05, 13.41it/s]
 79%|███████▉  | 261/331 [00:14<00:05, 13.34it/s]
 79%|███████▉  | 263/331 [00:14<00:05, 12.96it/s]
 80%|████████  | 265/331 [00:15<00:05, 12.98it/s]
 81%|████████  | 267/331 [00:15<00:04, 12.87it/s]
 81%|████████▏ | 269/331 [00:15<00:04, 12.75it/s]
 82%|████████▏ | 271/331 [00:15<00:04, 12.88it/s]
 82%|████████▏ | 273/331 [00:15<00:04, 12.88it/s]
 83%|████████▎ | 275/331 [00:15<00:04, 12.77it/s]
 84%|████████▎ | 277/331 [00:16<00:04, 12.57it/s]
 84%|████████▍ | 279/331 [00:16<00:04, 12.56it/s]
 85%|████████▍ | 281/331 [00:16<00:03, 12.63it/s]
 85%|████████▌ | 283/331 [00:16<00:03, 12.66it/s]
 86%|████████▌ | 285/331 [00:16<00:03, 12.47it/s]
 87%|████████▋ | 287/331 [00:16<00:03, 12.58it/s]
 87%|████████▋ | 289/331 [00:17<00:03, 12.57it/s]
 88%|████████▊ | 291/331 [00:17<00:03, 12.41it/s]
 89%|████████▊ | 293/331 [00:17<00:03, 12.25it/s]
 89%|████████▉ | 295/331 [00:17<00:02, 12.34it/s]
 90%|████████▉ | 297/331 [00:17<00:02, 12.22it/s]
 90%|█████████ | 299/331 [00:17<00:02, 12.38it/s]
 91%|█████████ | 301/331 [00:18<00:02, 12.27it/s]
 92%|█████████▏| 303/331 [00:18<00:02, 12.30it/s]
 92%|█████████▏| 305/331 [00:18<00:02, 12.21it/s]
 93%|█████████▎| 307/331 [00:18<00:01, 12.18it/s]
 93%|█████████▎| 309/331 [00:18<00:01, 12.29it/s]
 94%|█████████▍| 311/331 [00:18<00:01, 12.26it/s]
 95%|█████████▍| 313/331 [00:18<00:01, 12.23it/s]
 95%|█████████▌| 315/331 [00:19<00:01, 12.01it/s]
 96%|█████████▌| 317/331 [00:19<00:01, 11.96it/s]
 96%|█████████▋| 319/331 [00:19<00:01, 11.69it/s]
 97%|█████████▋| 321/331 [00:19<00:00, 11.13it/s]
 98%|█████████▊| 323/331 [00:19<00:00, 10.30it/s]
 98%|█████████▊| 325/331 [00:20<00:00,  9.63it/s]
 98%|█████████▊| 326/331 [00:20<00:00,  9.33it/s]
 99%|█████████▉| 327/331 [00:20<00:00,  8.97it/s]
 99%|█████████▉| 328/331 [00:20<00:00,  8.46it/s]
 99%|█████████▉| 329/331 [00:20<00:00,  8.03it/s]
100%|█████████▉| 330/331 [00:20<00:00,  7.58it/s]
100%|██████████| 331/331 [00:21<00:00,  7.44it/s]
100%|██████████| 331/331 [00:21<00:00, 15.76it/s]

from skimage import data
from scipy import ndimage as ndi
from napari_animation import Animation
import napari


blobs = data.binary_blobs(length=128, volume_fraction=0.1, n_dim=3)
viewer = napari.Viewer()
viewer.add_image(blobs.astype(float), name="blobs")
labeled = ndi.label(blobs)[0]
viewer.add_labels(labeled, name="blob ID")

animation = Animation(viewer)
viewer.update_console({"animation": animation})

animation.capture_keyframe()
viewer.camera.zoom = 0.2
animation.capture_keyframe()
viewer.camera.zoom = 10.0
viewer.camera.center = (0, 40.0, 10.0)
animation.capture_keyframe()
viewer.dims.current_step = (60, 0, 0)
animation.capture_keyframe(steps=60)
viewer.dims.current_step = (0, 0, 0)
animation.capture_keyframe(steps=60)
viewer.reset_view()
animation.capture_keyframe()

viewer.dims.ndisplay = 3
viewer.camera.angles = (0.0, 0.0, 90.0)
animation.capture_keyframe()
viewer.camera.zoom = 2.4
animation.capture_keyframe()
viewer.camera.angles = (-7.0, 15.7, 62.4)
animation.capture_keyframe(steps=60)
viewer.camera.angles = (2.0, -24.4, -36.7)
animation.capture_keyframe(steps=60)
viewer.reset_view()
viewer.camera.angles = (0.0, 0.0, 90.0)
animation.capture_keyframe()
animation.animate("animateMixed.mp4", canvas_only=False)