Note
Go to the end to download the full example code.
Animate mixed#
Display a labels layer above of an image layer using the add_labels and add_image APIs
Rendering frames...
0%| | 0/331 [00:00<?, ?it/s]IMAGEIO FFMPEG_WRITER WARNING: input image is not divisible by macro_block_size=16, resizing from (854, 626) to (864, 640) to ensure video compatibility with most codecs and players. To prevent resizing, make your input image divisible by the macro_block_size or set the macro_block_size to 1 (risking incompatibility).
0%| | 1/331 [00:00<01:08, 4.80it/s]
2%|▏ | 5/331 [00:00<00:17, 18.28it/s]
3%|▎ | 10/331 [00:00<00:11, 28.04it/s]
5%|▍ | 15/331 [00:00<00:09, 33.89it/s]
6%|▌ | 20/331 [00:00<00:08, 37.36it/s]
8%|▊ | 25/331 [00:00<00:07, 39.15it/s]
9%|▉ | 30/331 [00:00<00:07, 39.43it/s]
11%|█ | 35/331 [00:01<00:08, 33.26it/s]
12%|█▏ | 39/331 [00:01<00:09, 29.59it/s]
13%|█▎ | 43/331 [00:01<00:10, 26.76it/s]
14%|█▍ | 46/331 [00:01<00:11, 25.53it/s]
15%|█▍ | 49/331 [00:01<00:11, 24.39it/s]
16%|█▌ | 52/331 [00:01<00:11, 24.36it/s]
17%|█▋ | 55/331 [00:01<00:11, 23.59it/s]
18%|█▊ | 58/331 [00:02<00:11, 23.29it/s]
18%|█▊ | 61/331 [00:02<00:11, 23.12it/s]
19%|█▉ | 64/331 [00:02<00:11, 22.75it/s]
20%|██ | 67/331 [00:02<00:11, 22.65it/s]
21%|██ | 70/331 [00:02<00:11, 22.62it/s]
22%|██▏ | 73/331 [00:02<00:11, 22.83it/s]
23%|██▎ | 76/331 [00:02<00:11, 22.17it/s]
24%|██▍ | 79/331 [00:03<00:11, 22.07it/s]
25%|██▍ | 82/331 [00:03<00:11, 22.27it/s]
26%|██▌ | 85/331 [00:03<00:11, 22.25it/s]
27%|██▋ | 88/331 [00:03<00:10, 22.22it/s]
27%|██▋ | 91/331 [00:03<00:10, 22.80it/s]
28%|██▊ | 94/331 [00:03<00:09, 24.31it/s]
29%|██▉ | 97/331 [00:03<00:09, 25.30it/s]
30%|███ | 100/331 [00:03<00:08, 26.27it/s]
31%|███ | 103/331 [00:04<00:08, 26.66it/s]
32%|███▏ | 106/331 [00:04<00:08, 27.21it/s]
33%|███▎ | 109/331 [00:04<00:08, 27.70it/s]
34%|███▍ | 112/331 [00:04<00:07, 28.01it/s]
35%|███▍ | 115/331 [00:04<00:07, 28.22it/s]
36%|███▌ | 118/331 [00:04<00:07, 28.44it/s]
37%|███▋ | 121/331 [00:04<00:07, 28.42it/s]
37%|███▋ | 124/331 [00:04<00:07, 27.38it/s]
38%|███▊ | 127/331 [00:04<00:07, 27.52it/s]
39%|███▉ | 130/331 [00:04<00:07, 27.65it/s]
40%|████ | 133/331 [00:05<00:07, 27.86it/s]
41%|████ | 136/331 [00:05<00:06, 27.96it/s]
42%|████▏ | 139/331 [00:05<00:06, 28.15it/s]
43%|████▎ | 142/331 [00:05<00:06, 28.26it/s]
44%|████▍ | 145/331 [00:05<00:06, 28.50it/s]
45%|████▍ | 148/331 [00:05<00:06, 28.49it/s]
46%|████▌ | 151/331 [00:05<00:06, 28.49it/s]
47%|████▋ | 155/331 [00:05<00:05, 31.26it/s]
48%|████▊ | 159/331 [00:05<00:05, 33.04it/s]
49%|████▉ | 163/331 [00:06<00:04, 33.92it/s]
50%|█████ | 167/331 [00:06<00:06, 24.01it/s]
51%|█████▏ | 170/331 [00:06<00:09, 16.11it/s]
52%|█████▏ | 173/331 [00:07<00:12, 12.97it/s]
53%|█████▎ | 175/331 [00:07<00:13, 11.83it/s]
53%|█████▎ | 177/331 [00:07<00:14, 10.79it/s]
54%|█████▍ | 179/331 [00:07<00:15, 10.11it/s]
55%|█████▍ | 181/331 [00:07<00:15, 9.55it/s]
55%|█████▌ | 183/331 [00:08<00:15, 9.40it/s]
56%|█████▌ | 185/331 [00:08<00:15, 9.55it/s]
56%|█████▋ | 187/331 [00:08<00:14, 9.90it/s]
57%|█████▋ | 189/331 [00:08<00:13, 10.43it/s]
58%|█████▊ | 191/331 [00:08<00:12, 11.08it/s]
58%|█████▊ | 193/331 [00:09<00:11, 11.85it/s]
59%|█████▉ | 195/331 [00:09<00:10, 12.66it/s]
60%|█████▉ | 197/331 [00:09<00:09, 13.52it/s]
60%|██████ | 199/331 [00:09<00:09, 14.12it/s]
61%|██████ | 201/331 [00:09<00:08, 14.56it/s]
61%|██████▏ | 203/331 [00:09<00:08, 14.84it/s]
62%|██████▏ | 205/331 [00:09<00:08, 14.87it/s]
63%|██████▎ | 207/331 [00:09<00:08, 15.08it/s]
63%|██████▎ | 209/331 [00:10<00:08, 14.98it/s]
64%|██████▎ | 211/331 [00:10<00:08, 14.93it/s]
64%|██████▍ | 213/331 [00:10<00:07, 14.90it/s]
65%|██████▍ | 215/331 [00:10<00:07, 14.59it/s]
66%|██████▌ | 217/331 [00:10<00:07, 14.39it/s]
66%|██████▌ | 219/331 [00:10<00:07, 14.09it/s]
67%|██████▋ | 221/331 [00:10<00:07, 13.99it/s]
67%|██████▋ | 223/331 [00:11<00:07, 13.73it/s]
68%|██████▊ | 225/331 [00:11<00:07, 13.68it/s]
69%|██████▊ | 227/331 [00:11<00:07, 13.67it/s]
69%|██████▉ | 229/331 [00:11<00:07, 13.74it/s]
70%|██████▉ | 231/331 [00:11<00:07, 13.95it/s]
70%|███████ | 233/331 [00:11<00:06, 14.17it/s]
71%|███████ | 235/331 [00:11<00:06, 14.37it/s]
72%|███████▏ | 237/331 [00:12<00:06, 14.52it/s]
72%|███████▏ | 239/331 [00:12<00:06, 14.43it/s]
73%|███████▎ | 241/331 [00:12<00:06, 14.61it/s]
73%|███████▎ | 243/331 [00:12<00:05, 14.67it/s]
74%|███████▍ | 245/331 [00:12<00:05, 14.72it/s]
75%|███████▍ | 247/331 [00:12<00:05, 14.67it/s]
75%|███████▌ | 249/331 [00:12<00:05, 14.25it/s]
76%|███████▌ | 251/331 [00:13<00:05, 14.23it/s]
76%|███████▋ | 253/331 [00:13<00:05, 14.07it/s]
77%|███████▋ | 255/331 [00:13<00:05, 13.89it/s]
78%|███████▊ | 257/331 [00:13<00:05, 13.98it/s]
78%|███████▊ | 259/331 [00:13<00:05, 13.83it/s]
79%|███████▉ | 261/331 [00:13<00:05, 13.99it/s]
79%|███████▉ | 263/331 [00:13<00:04, 13.81it/s]
80%|████████ | 265/331 [00:14<00:04, 13.78it/s]
81%|████████ | 267/331 [00:14<00:04, 13.60it/s]
81%|████████▏ | 269/331 [00:14<00:04, 13.72it/s]
82%|████████▏ | 271/331 [00:14<00:04, 13.40it/s]
82%|████████▏ | 273/331 [00:14<00:04, 13.51it/s]
83%|████████▎ | 275/331 [00:14<00:04, 13.51it/s]
84%|████████▎ | 277/331 [00:14<00:04, 13.47it/s]
84%|████████▍ | 279/331 [00:15<00:03, 13.36it/s]
85%|████████▍ | 281/331 [00:15<00:03, 13.39it/s]
85%|████████▌ | 283/331 [00:15<00:03, 13.36it/s]
86%|████████▌ | 285/331 [00:15<00:03, 13.46it/s]
87%|████████▋ | 287/331 [00:15<00:03, 13.48it/s]
87%|████████▋ | 289/331 [00:15<00:03, 13.71it/s]
88%|████████▊ | 291/331 [00:15<00:02, 13.60it/s]
89%|████████▊ | 293/331 [00:16<00:02, 13.60it/s]
89%|████████▉ | 295/331 [00:16<00:02, 13.73it/s]
90%|████████▉ | 297/331 [00:16<00:02, 13.85it/s]
90%|█████████ | 299/331 [00:16<00:02, 13.79it/s]
91%|█████████ | 301/331 [00:16<00:02, 13.66it/s]
92%|█████████▏| 303/331 [00:16<00:02, 13.65it/s]
92%|█████████▏| 305/331 [00:17<00:01, 13.58it/s]
93%|█████████▎| 307/331 [00:17<00:01, 13.51it/s]
93%|█████████▎| 309/331 [00:17<00:01, 13.45it/s]
94%|█████████▍| 311/331 [00:17<00:01, 13.16it/s]
95%|█████████▍| 313/331 [00:17<00:01, 13.02it/s]
95%|█████████▌| 315/331 [00:17<00:01, 12.86it/s]
96%|█████████▌| 317/331 [00:17<00:01, 12.93it/s]
96%|█████████▋| 319/331 [00:18<00:00, 12.66it/s]
97%|█████████▋| 321/331 [00:18<00:00, 12.30it/s]
98%|█████████▊| 323/331 [00:18<00:00, 11.63it/s]
98%|█████████▊| 325/331 [00:18<00:00, 10.81it/s]
99%|█████████▉| 327/331 [00:18<00:00, 10.03it/s]
99%|█████████▉| 329/331 [00:19<00:00, 9.51it/s]
100%|█████████▉| 330/331 [00:19<00:00, 9.28it/s]
100%|██████████| 331/331 [00:19<00:00, 9.02it/s]
100%|██████████| 331/331 [00:19<00:00, 17.05it/s]
from skimage import data
from scipy import ndimage as ndi
from napari_animation import Animation
import napari
blobs = data.binary_blobs(length=128, volume_fraction=0.1, n_dim=3)
viewer = napari.Viewer()
viewer.add_image(blobs.astype(float), name="blobs")
labeled = ndi.label(blobs)[0]
viewer.add_labels(labeled, name="blob ID")
animation = Animation(viewer)
viewer.update_console({"animation": animation})
animation.capture_keyframe()
viewer.camera.zoom = 0.2
animation.capture_keyframe()
viewer.camera.zoom = 10.0
viewer.camera.center = (0, 40.0, 10.0)
animation.capture_keyframe()
viewer.dims.current_step = (60, 0, 0)
animation.capture_keyframe(steps=60)
viewer.dims.current_step = (0, 0, 0)
animation.capture_keyframe(steps=60)
viewer.reset_view()
animation.capture_keyframe()
viewer.dims.ndisplay = 3
viewer.camera.angles = (0.0, 0.0, 90.0)
animation.capture_keyframe()
viewer.camera.zoom = 2.4
animation.capture_keyframe()
viewer.camera.angles = (-7.0, 15.7, 62.4)
animation.capture_keyframe(steps=60)
viewer.camera.angles = (2.0, -24.4, -36.7)
animation.capture_keyframe(steps=60)
viewer.reset_view()
viewer.camera.angles = (0.0, 0.0, 90.0)
animation.capture_keyframe()
animation.animate("animateMixed.mp4", canvas_only=False)
Total running time of the script: (0 minutes 22.061 seconds)