Note
Go to the end to download the full example code.
Animate mixed#
Display a labels layer above of an image layer using the add_labels and add_image APIs
/home/runner/work/napari-animation/napari-animation/examples/animateMixed.py:16: FutureWarning: `napari.view_image` is deprecated and will be removed in napari 0.7.0.
Use `viewer = napari.Viewer(); viewer.add_image(...)` instead.
viewer = napari.view_image(blobs.astype(float), name="blobs")
Rendering frames...
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from skimage import data
from scipy import ndimage as ndi
from napari_animation import Animation
import napari
blobs = data.binary_blobs(length=128, volume_fraction=0.1, n_dim=3)
viewer = napari.view_image(blobs.astype(float), name="blobs")
labeled = ndi.label(blobs)[0]
viewer.add_labels(labeled, name="blob ID")
animation = Animation(viewer)
viewer.update_console({"animation": animation})
animation.capture_keyframe()
viewer.camera.zoom = 0.2
animation.capture_keyframe()
viewer.camera.zoom = 10.0
viewer.camera.center = (0, 40.0, 10.0)
animation.capture_keyframe()
viewer.dims.current_step = (60, 0, 0)
animation.capture_keyframe(steps=60)
viewer.dims.current_step = (0, 0, 0)
animation.capture_keyframe(steps=60)
viewer.reset_view()
animation.capture_keyframe()
viewer.dims.ndisplay = 3
viewer.camera.angles = (0.0, 0.0, 90.0)
animation.capture_keyframe()
viewer.camera.zoom = 2.4
animation.capture_keyframe()
viewer.camera.angles = (-7.0, 15.7, 62.4)
animation.capture_keyframe(steps=60)
viewer.camera.angles = (2.0, -24.4, -36.7)
animation.capture_keyframe(steps=60)
viewer.reset_view()
viewer.camera.angles = (0.0, 0.0, 90.0)
animation.capture_keyframe()
animation.animate("animateMixed.mp4", canvas_only=False)
Total running time of the script: (0 minutes 23.653 seconds)