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  • Getting started
    • Quick start
    • How to install napari
    • How to install napari as a bundled app
    • How to launch napari
    • Viewer tutorial
    • Layers at a glance
  • napari tutorials
    • Annotation
      • Annotating videos with napari
    • Processing
      • Using Dask and napari to process & view large datasets
    • Segmentation
      • Annotating segmentation with text and bounding boxes
    • Tracking
      • Single cell tracking with napari
  • How-to guides
    • Using layers
      • Using the image layer
      • Using the labels layer
      • Using the points layer
      • Using the shapes layer
      • Using the surface layer
      • Using the tracks layer
      • Using the vectors layer
    • Extending napari
      • Creating widgets
      • Hooking up your own events
    • napari + ImageJ how-to guide
    • Napari in Docker
    • Performance monitoring
    • Running napari headlessly
    • Creating and testing themes
  • In-depth explanations
    • napari event loop
    • Multithreading in napari
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    • Preferences
    • Contexts and Expressions in napari
    • Events reference
  • Glossary
  • napari workshops
  • Sample databases
  • Gallery
    • Tags
      • analysis (4)
        • Add labels with features
        • Annotate 2D
        • Annotate segmentation with text
        • Paint nD
      • experimental (9)
        • Action manager
        • Interaction box image
        • Interactive move rectangle
        • Linked layers
        • New theme
        • Scale bar
        • Spherical points
        • Surface normals wireframe
        • Viewer FPS label
      • gui (16)
        • 3D image plane rendering
        • Action manager
        • bbox annotator
        • Custom key bindings
        • Custom mouse functions
        • Fourier transform playground
        • Get current viewer
        • Custom image interpolation kernels
        • Method to get napari style in magicgui based windows
        • magicgui Image Arithmetic
        • magicgui parameter sweep
        • magicgui viewer
        • Mouse drag callback
        • Multiple viewer widget
        • Multiple viewers
        • Set theme
      • historical (4)
        • Reader plugin
        • Shapes to labels
        • Update console
        • napari without gui_qt
      • interactivity (5)
        • Cursor position
        • Cursor ray
        • Fourier transform playground
        • Method to get napari style in magicgui based windows
        • Interactive scripting
      • layers (6)
        • 3D Paths
        • 3D image plane rendering
        • Add 3D image
        • Add labels
        • Add labels with features
        • Visualizing optical flow in napari
      • visualization-advanced (15)
        • 3D Paths
        • 3D image plane rendering
        • Add multiscale image
        • Add vectors color by angle
        • Affine transforms
        • Dynamic projections dask
        • Export Figure
        • nD multiscale image
        • nD multiscale image non-uniform
        • Points over time
        • Show points based on feature
        • To screenshot
        • Tracks 3D
        • Tracks 3D with graph
        • Visualizing optical flow in napari
      • visualization-basic (22)
        • Add grayscale image
        • Add image
        • Add image transformed
        • Add labels
        • Add points
        • Add points with features
        • Add points with multicolor text
        • Add points with text
        • Add shapes
        • Add shapes with features
        • Add shapes with text
        • Add surface 2D
        • Add vectors
        • Add vectors image
        • Image depth
        • Labels 2D
        • Layers
        • Minimum blending
        • Pass colormaps
        • Point cloud
        • Set colormaps
        • Tracks 2D
      • visualization-nD (20)
        • Add points 3D
        • Add 3D image
        • Add points on nD shapes
        • Concentric spheres
        • Dask nD image
        • Image points 3D
        • Custom image interpolation kernels
        • Labels 3D
        • Mixed dimensions labels
        • nD image
        • nD labels
        • nD points
        • nD points with features
        • nD shapes
        • nD shapes with text
        • nD surface
        • nD vectors
        • nD vectors image
        • Surface with texture and vertex_colors
        • Swap dims
  • Usage
  • Gallery

Gallery#

Examples of napari usage.

Note

If you want to submit a new example to this gallery, check out our contribution guide!

  • Tags

3D Paths

3D Paths

3D image plane rendering

3D image plane rendering

Action manager

Action manager

Add 3D image

Add 3D image

Add grayscale image

Add grayscale image

Add image

Add image

Add image transformed

Add image transformed

Add labels

Add labels

Add labels with features

Add labels with features

Add multiscale image

Add multiscale image

Add points

Add points

Add points 3D

Add points 3D

Add points on nD shapes

Add points on nD shapes

Add points with features

Add points with features

Add points with multicolor text

Add points with multicolor text

Add points with text

Add points with text

Add shapes

Add shapes

Add shapes with features

Add shapes with features

Add shapes with text

Add shapes with text

Add surface 2D

Add surface 2D

Add vectors

Add vectors

Add vectors color by angle

Add vectors color by angle

Add vectors image

Add vectors image

Affine transforms

Affine transforms

Annotate 2D

Annotate 2D

Annotate segmentation with text

Annotate segmentation with text

Concentric spheres

Concentric spheres

Cursor position

Cursor position

Cursor ray

Cursor ray

Custom image interpolation kernels

Custom image interpolation kernels

Custom key bindings

Custom key bindings

Custom mouse functions

Custom mouse functions

Dask nD image

Dask nD image

Dynamic projections dask

Dynamic projections dask

Export Figure

Export Figure

Fourier transform playground

Fourier transform playground

Get current viewer

Get current viewer

Image depth

Image depth

Image points 3D

Image points 3D

Interaction box image

Interaction box image

Interactive move rectangle

Interactive move rectangle

Interactive scripting

Interactive scripting

Labels 2D

Labels 2D

Labels 3D

Labels 3D

Layers

Layers

Linked layers

Linked layers

Method to get napari style in magicgui based windows

Method to get napari style in magicgui based windows

Minimum blending

Minimum blending

Mixed dimensions labels

Mixed dimensions labels

Mouse drag callback

Mouse drag callback

Multiple viewer widget

Multiple viewer widget

Multiple viewers

Multiple viewers

New theme

New theme

Paint nD

Paint nD

Pass colormaps

Pass colormaps

Point cloud

Point cloud

Points over time

Points over time

Reader plugin

Reader plugin

Scale bar

Scale bar

Set colormaps

Set colormaps

Set theme

Set theme

Shapes to labels

Shapes to labels

Show points based on feature

Show points based on feature

Spherical points

Spherical points

Surface normals wireframe

Surface normals wireframe

Surface with texture and vertex_colors

Surface with texture and vertex_colors

Swap dims

Swap dims

To screenshot

To screenshot

Tracks 2D

Tracks 2D

Tracks 3D

Tracks 3D

Tracks 3D with graph

Tracks 3D with graph

Update console

Update console

Viewer FPS label

Viewer FPS label

Visualizing optical flow in napari

Visualizing optical flow in napari

bbox annotator

bbox annotator

magicgui Image Arithmetic

magicgui Image Arithmetic

magicgui parameter sweep

magicgui parameter sweep

magicgui viewer

magicgui viewer

nD image

nD image

nD labels

nD labels

nD multiscale image

nD multiscale image

nD multiscale image non-uniform

nD multiscale image non-uniform

nD points

nD points

nD points with features

nD points with features

nD shapes

nD shapes

nD shapes with text

nD shapes with text

nD surface

nD surface

nD vectors

nD vectors

nD vectors image

nD vectors image

napari without gui_qt

napari without gui_qt

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